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In silico analysis of the secreted effectorome of the rubber tree pathogen Rigidoporus microporus highlights its potentially virulent proteins
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In silico analysis of the secreted effectorome of the rubber tree pathogen Rigidoporus microporus highlights its potentially virulent proteins

ORIGINAL RESEARCH ARTICLES

Front. Microbiol.

Sec. Microbe and virus interactions with plants

Volume 15 – 2024 |

doi: 10.3389/fmicb.2024.1439454

Provisionally accepted

  • 1

    Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Chatuchak, Thailand

  • 2

    Department of Plant Science, Faculty of Science, Mahidol University, Ratchathewi, Bangkok, Thailand

  • 3

    Institute of Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Uusimaa, Finland

The final, formatted version of the article will be published shortly.

    Rigidoporus microporus, the causative agent of white rot in rubber trees, poses a significant threat to global natural rubber production. Understanding the molecular mechanisms that promote its pathogenicity is critical for developing effective disease control strategies. The pathogen secretes effector proteins that play a central role in modulating host immune responses and infection. In this study, in silico analyses identified 357 putatively secreted effector proteins from the R. microporus genome, which were then integrated with previous RNA sequence data obtained in response to contact with rubber tree latex. Annotation of putative effectors suggested an abundance of proteins in several families associated with R. microporus virulence, particularly hydrophobin proteins and glycoside hydrolase (GH) proteins. The contribution of secreted effectors to fungal pathogenicity was discussed, especially in response to contact with rubber tree latex. For the protein structures, some unknown highly expressed effectors were predicted, revealing their similarity to aminopeptidase, ubiquitin ligase, spherulin and thaumatin protein. This integrative study further elucidates the molecular mechanism of R. microporus pathogenesis and provides alternative targets for the development of control strategies to combat white rot in rubber plantations.

    Keywords:
    Effectorome, Rigidoporus microporus, rubber plant, virulence, white root rot

    Receive:
    May 28, 2024;
    Accepted:
    27.August 2024.

    Copyright:
    © 2024 Longsaward, Viboonjun, Wen, and Asiegbu. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY). Use, distribution, or reproduction in other forums is permitted provided the original author(s) or licensor are credited and the original publication in this journal is cited in accordance with accepted academic practice. Use, distribution, or reproduction not in accordance with these terms is not permitted.

    * Correspondence:

    Fred O. Asiegbu, Institute of Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, FI-00014, Uusimaa, Finland

    Disclaimer:
    All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations or those of the publisher, editors, and reviewers. No warranty or endorsement is made by the publisher for any product reviewed in this article or for any claims made by its manufacturer.

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